The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama25095 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
Ama25097 | REVERSE TRANSCRIPTASES |
Ama25098 | AP ENDONUCLEASE |
Ama25099 | |
Ama25100 | AP ENDONUCLEASE |
Ama25102 | TUBULIN-SPECIFIC CHAPERONE A |
Ama25103 | OXIDASE/PEROXIDASE |
Ama25105 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama25106 | IQ DOMAIN-CONTAINING PROTEIN H |
Ama25107 | ACID CLUSTER PROTEIN 33 |
Ama25108 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama25109 | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 |
Ama25110 | THROMBOSPONDIN |
Ama25111 | BETA-1,4-GALACTOSYLTRANSFERASE |
Ama25113 | |
Ama25114 | AMMONIUM TRANSPORTER |
Ama25116 | TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT |
Ama25117 | |
Ama25118 | AMMONIUM TRANSPORTER |
Ama25119 | |
Ama25120 | |
Ama25121 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama25122 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama25123 | |
Ama25124 | UNCHARACTERIZED |
Ama25125 | TCF3 FUSION PARTNER |
Ama25126 | |
Ama25127 | |
Ama25128 | |
Ama25130 | |
Ama25131 | G-PROTEIN COUPLED RECEPTOR |
Ama25132 | PYGOPUS |
Ama25133 | OSTEOCLAST-STIMULATING FACTOR 1 |
Ama25134 | MARINER MOS1 TRANSPOSASE-LIKE PROTEIN |
Ama25135 | UNCHARACTERIZED |
Ama25137 | |
Ama25138 | |
Ama25139 | C2 DOMAIN-CONTAINING PROTEIN |
Ama25140 | C2 DOMAIN-CONTAINING PROTEIN |
Ama25141 | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED |
Ama25142 | STABILIZER OF AXONEMAL MICROTUBULES 2 |
Ama25143 | IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB |
Ama25144 | COPPER AMINE OXIDASE |
Ama25145 | |
Ama25146 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
Ama25147 | SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F |
Ama25148 | PEROXISOMAL BIOGENESIS FACTOR 11 |
Ama25149 | |
Ama25150 | AGAP011099-PA |
Ama25151 | CHITIN SYNTHASE |