The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama25014 | |
| Ama25015 | UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN |
| Ama25016 | CHARGED MULTIVESICULAR BODY PROTEIN |
| Ama25017 | |
| Ama25026 | - |
| Ama25027 | - |
| Ama25028 | |
| Ama25029 | |
| Ama25030 | |
| Ama25031 | |
| Ama25032 | SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL |
| Ama25033 | |
| Ama25034 | |
| Ama25035 | IP13529P |
| Ama25036 | |
| Ama25037 | |
| Ama25038 | |
| Ama25039 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 |
| Ama25040 | UBIQUITIN-ACTIVATING ENZYME E1 |
| Ama25041 | |
| Ama25042 | |
| Ama25043 | MICROTUBULE-ASSOCIATED PROTEIN |
| Ama25044 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama25051 | EXS-RELATED PROTEIN |
| Ama25052 | |
| Ama25053 | |
| Ama25063 | |
| Ama25064 | - |
| Ama25066 | EXS-RELATED PROTEIN |
| Ama25067 | EXS-RELATED PROTEIN |
| Ama25068 | FATTY ACID SYNTHASE |
| Ama25069 | |
| Ama25073 | |
| Ama25074 | |
| Ama25076 | |
| Ama25078 | |
| Ama25079 | NUCLEAR HORMONE RECEPTOR |
| Ama25080 | FRIZZLED |
| Ama25081 | |
| Ama25082 | |
| Ama25083 | DNA2/NAM7 HELICASE FAMILY |
| Ama25084 | PUTATIVE-RELATED |
| Ama25085 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama25086 | PUTATIVE-RELATED |
| Ama25087 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 161 |
| Ama25088 | TRANS-GOLGI PROTEIN GMX33 |
| Ama25089 | MULTIPLE PDZ DOMAIN PROTEIN |
| Ama25090 | |
| Ama25091 | SORTING NEXIN-22 AND 24 |
| Ama25092 |
