The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama24255 | TESTICULAR SOLUBLE ADENYLYL CYCLASE |
Ama24256 | TATA-BOX BINDING PROTEIN |
Ama24257 | |
Ama24258 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama24259 | |
Ama24260 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama24261 | |
Ama24262 | IONOTROPIC GLUTAMATE RECEPTOR |
Ama24263 | |
Ama24264 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama24265 | |
Ama24266 | INHIBITOR OF APOPTOSIS |
Ama24267 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama24268 | |
Ama24273 | WD40 REPEAT PROTEIN |
Ama24274 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
Ama24275 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
Ama24277 | |
Ama24279 | |
Ama24280 | |
Ama24284 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Ama24289 | DEOXYRIBONUCLEASE TATDN2-RELATED |
Ama24290 | L1 TRANSPOSABLE ELEMENT-RELATED |
Ama24291 | |
Ama24292 | |
Ama24293 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
Ama24294 | |
Ama24295 | GABA-B RECEPTOR |
Ama24297 | |
Ama24298 | GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45 |
Ama24299 | |
Ama242_5db7b01a | OXIDASE/PEROXIDASE |
Ama24300 | OPIOID GROWTH FACTOR RECEPTOR OGFR ZETA-TYPE OPIOID RECEPTOR |
Ama24301 | |
Ama24304 | SAM (S-ADENOSYL METHIONINE) TRANSPORTER |
Ama24305 | |
Ama24306 | |
Ama24307 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama24309 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
Ama24311 | |
Ama24313 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama24314 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama24315 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
Ama24316 | DEUBIQUITINATING PROTEIN VCIP135 |
Ama24317 | |
Ama24318 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama24320 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama24321 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama24322 | RETICULOCALBIN |
Ama24323 |