The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama24493 | ACTIN |
Ama24494 | |
Ama24495 | ACTIN |
Ama244_5db7b01a | SCAVENGER RECEPTOR CLASS F |
Ama24500 | |
Ama24501 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama24502 | |
Ama24506 | |
Ama24507 | |
Ama24508 | |
Ama24510 | |
Ama24511 | |
Ama24513 | TRANSPOSABLE ELEMENT-RELATED |
Ama24514 | OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL |
Ama24515 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama24516 | VESICLE PROTEIN SORTING-ASSOCIATED |
Ama24519 | CASEIN KINASE-RELATED |
Ama24521 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN |
Ama24522 | |
Ama24523 | - |
Ama24525 | G KINASE ANCHORING PROTEIN 1 |
Ama24526 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Ama24527 | |
Ama24529 | HISTONE-LYSINE N-METHYLTRANSFERASE ASH1 |
Ama24530 | HISTONE-LYSINE N-METHYLTRANSFERASE ASH1 |
Ama24532 | |
Ama24534 | KINESIN-LIKE PROTEIN KLP-3 |
Ama24535 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
Ama24536 | |
Ama24537 | |
Ama24539 | 8-OXO-DGTP DIPHOSPHATES NUDT15 |
Ama24540 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama24541 | THAP DOMAIN PROTEIN |
Ama24542 | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3 |
Ama24543 | SOLUTE CARRIER FAMILY 22 MEMBER |
Ama24545 | THAP DOMAIN PROTEIN |
Ama24546 | |
Ama24547 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Ama24548 | |
Ama24549 | F-BOX/WD REPEAT-CONTAINING PROTEIN 2 |
Ama24552 | |
Ama24553 | |
Ama24554 | COLLAGEN ALPHA |
Ama24555 | SI:CH211-171H4.7-RELATED |
Ama24556 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Ama24557 | |
Ama24558 | |
Ama24559 | ARRESTIN DOMAIN CONTAINING PROTEIN |
Ama24560 | |
Ama24561 |