The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama02301 | COPINE FAMILY PROTEIN 1 |
Ama02303 | |
Ama02304 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama02305 | OLIGOPEPTIDE TRANSPORTER-RELATED |
Ama02306 | RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED |
Ama02308 | OLIGOPEPTIDE TRANSPORTER-RELATED |
Ama02309 | OLIGOPEPTIDE TRANSPORTER-RELATED |
Ama02310 | OLIGOPEPTIDE TRANSPORTER-RELATED |
Ama02311 | |
Ama02312 | |
Ama02313 | |
Ama02314 | G-PROTEIN COUPLED RECEPTOR |
Ama02315 | OLIGOPEPTIDE TRANSPORTER-RELATED |
Ama02317 | |
Ama02320 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
Ama02321 | |
Ama02322 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama02325 | UBIQUITIN-PROTEIN LIGASE E3A-RELATED |
Ama02326 | - |
Ama02327 | |
Ama02330 | HOMEOBOX PROTEIN UNC-4 HOMOLOG |
Ama02331 | PUTATIVE-RELATED |
Ama02333 | HOMEOBOX PROTEIN UNC-4 HOMOLOG |
Ama02334 | |
Ama02335 | CASEIN KINASE-RELATED |
Ama02336 | |
Ama02337 | HEH2P |
Ama02338 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
Ama02339 | ACYL-COENZYME A SYNTHETASE |
Ama02340 | ACONITATE HYDRATASE B |
Ama02341 | |
Ama02342 | SOLUTE CARRIER FAMILY 35 |
Ama02343 | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT Q-RELATED |
Ama02344 | |
Ama02345 | |
Ama02346 | CELL DIVISION CYCLE AND APOPTOSIS REGULATOR PROTEIN |
Ama02347 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
Ama02349 | |
Ama02350 | REGULATORY-ASSOCIATED PROTEIN OF MTOR |
Ama02351 | REGULATORY-ASSOCIATED PROTEIN OF MTOR |
Ama02352 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
Ama02353 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Ama02354 | UPF0561 PROTEIN C2ORF68 |
Ama02355 | ACYL-COA DESATURASE |
Ama02356 | |
Ama02357 | ACYL-COA DESATURASE |
Ama02358 | |
Ama02360 | UNCHARACTERIZED |
Ama02361 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
Ama02362 | LEUCOKININ RECEPTOR-RELATED |