The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama01938 | RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1 |
| Ama01939 | SOWAH (DROSOPHILA) HOMOLOG |
| Ama01940 | VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL |
| Ama01941 | TRANSPOSON |
| Ama01942 | SPHINGOMYELIN SYNTHETASE |
| Ama01943 | PHD FINGER-LIKE DOMAIN-CONTAINING PROTEIN 5A |
| Ama01944 | |
| Ama01950 | CADHERIN-23 |
| Ama01953 | CADHERIN-23 |
| Ama01955 | |
| Ama01960 | LYSOSOMAL ACID LIPASE-RELATED |
| Ama01961 | LYSOSOMAL ACID LIPASE-RELATED |
| Ama01963 | |
| Ama01964 | |
| Ama01965 | |
| Ama01967 | RNA-BINDING ASCH DOMAIN PROTEIN |
| Ama01968 | ZINC FINGER PROTEIN |
| Ama01969 | CADHERIN-23 |
| Ama01970 | |
| Ama01971 | |
| Ama01972 | |
| Ama01973 | |
| Ama01974 | TRANSPOSABLE ELEMENT-RELATED |
| Ama01975 | |
| Ama01977 | UNCHARACTERIZED |
| Ama01978 | SI:DKEY-97L20.6 |
| Ama01979 | |
| Ama01980 | TRANSPOSABLE ELEMENT-RELATED |
| Ama01981 | CALCIUM-REGULATED HEAT STABLE PROTEIN CRHSP-24-RELATED |
| Ama01982 | |
| Ama01984 | GALECTIN |
| Ama01985 | |
| Ama01986 | |
| Ama01987 | |
| Ama01988 | UNCHARACTERIZED |
| Ama01996 | RAD50-INTERACTING PROTEIN 1 RINT-1 |
| Ama02002 | |
| Ama02005 | |
| Ama02008 | ZINC FINGER PROTEIN |
| Ama02009 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Ama02010 | PHOSPHOLIPASE B-RELATED |
| Ama02011 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Ama02013 | |
| Ama02014 | PHOSPHOLIPASE B-RELATED |
| Ama02015 | ACROSIN-RELATED |
| Ama02016 | 28S RIBOSOMAL PROTEIN S34, MITOCHONDRIAL |
| Ama02017 | ADP RIBOSYLATION FACTOR-RELATED |
| Ama02018 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
| Ama02019 | E3 UBIQUITIN-PROTEIN LIGASE CHIP |
| Ama02021 | HL01030P-RELATED |
