The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama01801 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| Ama01802 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama01803 | |
| Ama01804 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama01805 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| Ama01806 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| Ama01807 | UNCHARACTERIZED |
| Ama01808 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Ama01810 | TRANSDUCER OF ERBB2 TOB |
| Ama01811 | ARMADILLO-TYPE FOLD-RELATED |
| Ama01812 | ARMADILLO-TYPE FOLD-RELATED |
| Ama01813 | ARMADILLO-TYPE FOLD-RELATED |
| Ama01815 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Ama01816 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
| Ama01817 | 40S RIBOSOMAL PROTEIN S15A |
| Ama01820 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| Ama01821 | |
| Ama01822 | |
| Ama01823 | TATA-BOX BINDING PROTEIN |
| Ama01824 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama01825 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
| Ama01827 | |
| Ama01828 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Ama01829 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama01830 | FACTOR VIII-ASSOCIATED GENE 1 |
| Ama01831 | TYROSYL-TRNA SYNTHETASE |
| Ama01832 | FATTY ACID DESATURASE 2 |
| Ama01833 | LETHAL 2 GIANT LARVAE PROTEIN |
| Ama01834 | CYTOCHROME P450 FAMILY 3 |
| Ama01835 | UNCHARACTERIZED |
| Ama01836 | MODULATOR OF SMOOTHENED PROTEIN |
| Ama01837 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED |
| Ama01838 | |
| Ama01839 | ACYL-COA DEHYDROGENASE |
| Ama01841 | NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1 |
| Ama01842 | ATP-DEPENDENT RNA HELICASE DBP3 |
| Ama01843 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| Ama01844 | |
| Ama01845 | |
| Ama01846 | ER LUMEN PROTEIN RETAINING RECEPTOR |
| Ama01847 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| Ama01848 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama01849 | |
| Ama01851 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| Ama01852 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED |
| Ama01853 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED |
| Ama01854 | PROTEIN PHOSPHATASE 2C |
| Ama01856 | WD REPEAT PROTEIN 26-RELATED |
| Ama01857 | SERINE/THREONINE-PROTEIN KINASE LMTK1 |
| Ama01859 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
