About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama01431
Ama01432CUBILIN-LIKE PROTEIN
Ama01433TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172
Ama01434
Ama01435EPSIN/ENT-RELATED
Ama01436ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Ama01437PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
Ama01441UNCHARACTERIZED
Ama01442FATTY ACID ACYL TRANSFERASE-RELATED
Ama01443VHS DOMAIN CONTAINING PROTEIN FAMILY
Ama01444PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
Ama01445ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2/ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR
Ama01446VACUOLAR IMPORT AND DEGRADATION PROTEIN 24
Ama01447PDZ AND LIM DOMAIN PROTEIN ZASP
Ama01448AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED
Ama01449DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN
Ama01450GENERAL VESICULAR TRANSPORT FACTOR P115
Ama01451FATTY ACID ACYL TRANSFERASE-RELATED
Ama01454
Ama01455CYTOCHROME P450 508A4-RELATED
Ama01456
Ama01457BRAIN PROTEIN I3
Ama01458L-THREONINE ALDOLASE-RELATED
Ama01459L-THREONINE ALDOLASE-RELATED
Ama01460UNCHARACTERIZED
Ama01463IONOTROPIC GLUTAMATE RECEPTOR
Ama01464PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
Ama01465COPROPORPHYRINIGEN III OXIDASE
Ama01466
Ama01467
Ama01469
Ama01470WD-40 REPEAT PROTEIN
Ama01474ANNEXIN
Ama01478NEUROTRANSMITTER GATED ION CHANNEL
Ama01479
Ama01480
Ama01481
Ama01482ENDONUCLEASE-RELATED
Ama01483POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Ama01484TNF RECEPTOR ASSOCIATED FACTOR
Ama01485
Ama01486
Ama01487
Ama01488MEVALONATE KINASE/GALACTOKINASE
Ama01489PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama01490REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama01491SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
Ama01492NEUROTRANSMITTER GATED ION CHANNEL
Ama01493TRANSCRIPTION INITIATION FACTOR IA RRN3
Ama01494TUBULIN
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