About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama01354TRANSPOSON
Ama01355
Ama01356
Ama01357SET DOMAIN-CONTAINING PROTEIN-RELATED
Ama01358INHIBITOR OF APOPTOSIS
Ama01359
Ama01360
Ama01361BRCA1-ASSOCIATED ATM ACTIVATOR 1
Ama01362CYTOCHROME P450 FAMILY 4
Ama01363CYTOCHROME P450 FAMILY 4
Ama01364CYTOCHROME P450 FAMILY 4
Ama01365SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
Ama01366SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
Ama01367SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
Ama01368DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Ama01379NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Ama01380MAMMALIAN EPENDYMIN-RELATED PROTEIN 1
Ama01381MAMMALIAN EPENDYMIN-RELATED PROTEIN 1
Ama01384THAP DOMAIN PROTEIN
Ama01385NEUROTRANSMITTER GATED ION CHANNEL
Ama01388
Ama01389RIBOSOME BIOGENESIS PROTEIN
Ama01391SEC14 RELATED PROTEIN
Ama01392RNA-BINDING MOTIF PROTEIN 14B
Ama01393
Ama01394
Ama01395
Ama01396CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE
Ama01397ZINC FINGER PROTEIN 142
Ama01399PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Ama01400
Ama01402KRAB AND ZINC FINGER DOMAIN-CONTAINING
Ama01403ALPHA-GLUCOSIDASE
Ama01404PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Ama01405
Ama01406
Ama01409ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
Ama01415AQUAPORIN TRANSPORTER
Ama01416
Ama01417COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Ama01419CRUMBS FAMILY MEMBER
Ama01421CRUMBS FAMILY MEMBER
Ama01423SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
Ama01424
Ama01425SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
Ama01426EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED
Ama01427RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
Ama01428
Ama01429TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172
Ama01430SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
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