The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama01210 | 60S RIBOSOMAL PROTEIN L3-RELATED |
Ama01211 | POTE ANKYRIN DOMAIN |
Ama01218 | PDZ DOMAIN-CONTAINING PROTEIN |
Ama01222 | - |
Ama01224 | SPERMATHECAL PHYSIOLOGY VARIANT |
Ama01226 | |
Ama01228 | MITOGEN-ACTIVATED PROTEIN KINASE |
Ama01230 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
Ama01231 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
Ama01234 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
Ama01242 | LEUCOKININ RECEPTOR-RELATED |
Ama01243 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama01244 | BRAIN PROTEIN I3 |
Ama01245 | NEUROPEPTIDE Y RECEPTOR |
Ama01246 | G-PROTEIN COUPLED RECEPTOR |
Ama01247 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama01248 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama01249 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 299 |
Ama01250 | |
Ama01253 | TGF-BETA FAMILY |
Ama01256 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
Ama01257 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
Ama01258 | |
Ama01259 | TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONE |
Ama01260 | |
Ama01262 | |
Ama01264 | KETIMINE REDUCTASE MU-CRYSTALLIN |
Ama01265 | PUTATIVE-RELATED |
Ama01266 | KETIMINE REDUCTASE MU-CRYSTALLIN |
Ama01267 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
Ama01270 | PERIAXIN-LIKE |
Ama01271 | - |
Ama01272 | HEPARAN SULFATE SULFOTRANSFERASE |
Ama01275 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
Ama01276 | PERIAXIN-LIKE |
Ama01277 | CALCYPHOSIN |
Ama01278 | CALCYPHOSIN |
Ama01279 | CALCYPHOSIN |
Ama01280 | CALCYPHOSIN |
Ama01281 | CHECKPOINT SUPPRESSOR 1-LIKE, ISOFORM A-RELATED |
Ama01282 | TEKTIN |
Ama01283 | TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 2 |
Ama01285 | SCAFFOLD ATTACHMENT FACTOR B-RELATED |
Ama01287 | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A |
Ama01288 | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A |
Ama01289 | ZGC:195170 |
Ama01290 | ET TRANSLATION PRODUCT-RELATED |
Ama01291 | UNCHARACTERIZED |
Ama01292 | |
Ama01293 | G BETA-LIKE PROTEIN GBL |