About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama00776
Ama00779
Ama00782
Ama00783FAT ATYPICAL CADHERIN-RELATED
Ama00786
Ama00787G-PROTEIN COUPLED RECEPTOR
Ama00789SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Ama00790-
Ama00791XYLOSYLTRANSFERASE OXT
Ama00793GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
Ama00794TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE
Ama00795INHIBITOR OF APOPTOSIS
Ama00796LYSOSOMAL ACID LIPASE-RELATED
Ama00797SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
Ama00799FASCIN
Ama00800
Ama00801INTERFERON REGULATORY FACTOR
Ama00803INTERFERON REGULATORY FACTOR
Ama00804ATP-DEPENDENT RNA HELICASE RHLE-RELATED
Ama00809DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2
Ama00810ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED
Ama00811DNA-3-METHYLADENINE GLYCOSYLASE
Ama00812SET DOMAIN-CONTAINING PROTEIN-RELATED
Ama00813NUCLEAR RECEPTOR COACTIVATOR 4
Ama00814
Ama00816P53 AND DNA DAMAGE-REGULATED PROTEIN
Ama00817TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
Ama00818COILED-COIL DOMAIN-CONTAINING PROTEIN 40
Ama008194-NITROPHENYLPHOSPHATASE-RELATED
Ama00821NADH-UBIQUINONE OXIDOREDUCTASE
Ama00822CYCLINS
Ama00824SRCR DOMAIN-CONTAINING PROTEIN
Ama00825CARDIOLIPIN HYDROLASE
Ama00826UNCHARACTERIZED
Ama00827
Ama00828ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Ama00831
Ama00832
Ama00833CYTOCHROME C OXIDASE SUBUNIT 6B
Ama00835
Ama00836OLIGORIBONUCLEASE, MITOCHONDRIAL
Ama00837
Ama00838RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN
Ama00839C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED
Ama00840TETHER CONTAINING UBX DOMAIN FOR GLUT4
Ama00842GROUP XII SECRETORY PHOSPHOLIPASE A2 FAMILY MEMBER
Ama00843TRYPSIN-RELATED
Ama00845REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama00846PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama00848
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