The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama02117 | |
| Ama02118 | ZINC FINGER, ZZ DOMAIN CONTAINING 3 |
| Ama02119 | MONOCARBOXYLATE TRANSPORTER |
| Ama02120 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Ama02121 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Ama02122 | |
| Ama02123 | |
| Ama02124 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| Ama02125 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Ama02126 | NEUROPEPTIDE Y RECEPTOR |
| Ama02127 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| Ama02129 | LEUCOKININ RECEPTOR-RELATED |
| Ama02130 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Ama02131 | STEREOCILIN RELATED |
| Ama02132 | |
| Ama02133 | |
| Ama02136 | |
| Ama02137 | |
| Ama02138 | |
| Ama02139 | |
| Ama02140 | BLR2807 PROTEIN |
| Ama02141 | |
| Ama02142 | ACROSIN-RELATED |
| Ama02143 | |
| Ama02144 | |
| Ama02146 | REVERSE TRANSCRIPTASES |
| Ama02147 | |
| Ama02148 | |
| Ama02149 | |
| Ama02150 | |
| Ama02152 | DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 |
| Ama02156 | SODIUM/CALCIUM EXCHANGER |
| Ama02157 | |
| Ama02159 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
| Ama02160 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| Ama02161 | METHYLTHIORIBOSE KINASE |
| Ama02162 | SGT1 PROTEIN HSGT1 SUPPRESSOR OF GCR2 |
| Ama02165 | LATE ENDOSOMAL/LYSOSOMAL MP1 INTERACTING PROTEIN |
| Ama02166 | |
| Ama02167 | - |
| Ama02168 | |
| Ama02169 | HISTONE ACETYLTRANSFERASE |
| Ama02170 | ADENOSINE KINASE |
| Ama02171 | AN1-TYPE ZINC FINGER PROTEIN 4 |
| Ama02172 | - |
| Ama02173 | ANKYRIN REPEAT PROTEIN |
| Ama02174 | RAS-RELATED PROTEIN RAB |
| Ama02175 | SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN |
| Ama02176 | ACTIN |
| Ama02177 |
