The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama22920 | |
| Ama22921 | |
| Ama22922 | |
| Ama22923 | |
| Ama22924 | |
| Ama22926 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Ama22927 | CONTACTIN 5 |
| Ama22929 | |
| Ama22930 | CONTACTIN 5 |
| Ama22931 | |
| Ama22932 | NEPHRIN |
| Ama22933 | |
| Ama22934 | CONTACTIN 5 |
| Ama22935 | |
| Ama22936 | CONTACTIN 5 |
| Ama22937 | INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN |
| Ama22938 | TETRASPANIN |
| Ama22939 | |
| Ama22940 | |
| Ama22941 | |
| Ama22942 | |
| Ama22943 | INTRACELLULAR TRAFFIC PROTEIN-RELATED |
| Ama22946 | HISTONE DEACETYLASE HDAC1-RELATED |
| Ama22947 | ZINC FINGER PROTEIN |
| Ama22948 | SODIUM/HYDROGEN EXCHANGER |
| Ama22955 | |
| Ama22956 | |
| Ama22957 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama22960 | MICROTUBULE ASSOCIATED PROTEIN XMAP215 |
| Ama22961 | MICROTUBULE ASSOCIATED PROTEIN XMAP215 |
| Ama22962 | ATILLA, ISOFORM B-RELATED-RELATED |
| Ama22965 | LD18447P |
| Ama22966 | ALDO/KETO REDUCTASE |
| Ama22967 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C |
| Ama22968 | PHOSPHATIDYLINOSITOL SYNTHASE |
| Ama22969 | |
| Ama22970 | NINJURIN-RELATED |
| Ama22971 | NINJURIN-RELATED |
| Ama22972 | ZGC:195170 |
| Ama22973 | |
| Ama22974 | UNCHARACTERIZED |
| Ama22975 | REVERSE TRANSCRIPTASES |
| Ama22976 | ZGC:195170 |
| Ama22980 | SUGAR TRANSPORTER |
| Ama22982 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Ama22983 | |
| Ama22984 | HEME-BINDING MONOOXYGENASE FAMILY |
| Ama22985 | PHOSPHATIDYLINOSITOL KINASE |
| Ama22987 | |
| Ama22988 | SUPPRESSOR OF TY 5 |
