About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama22852E3 UBIQUITIN-PROTEIN LIGASE SIAH2
Ama22853REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama22854CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Ama2285552 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Ama22856CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Ama2285752 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Ama22858
Ama22859TNF RECEPTOR ASSOCIATED FACTOR
Ama22860ACYL-COA SYNTHETASE
Ama22861RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Ama22862INHIBITOR OF APOPTOSIS
Ama22863DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Ama22865DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1
Ama22866PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Ama22867NUCLEOBINDIN
Ama22868NUCLEOBINDIN
Ama22869LIPID PHOSPHATE PHOSPHATASE
Ama22870CS DOMAIN-CONTAINING PROTEIN
Ama22871VINCULIN
Ama22872VINCULIN
Ama22873VINCULIN
Ama22874SERINE/ARGININE RICH SPLICING FACTOR
Ama22875
Ama22876L-THREONINE 3-DEHYDROGENASE
Ama22877
Ama22879BETA TRANSDUCIN-RELATED PROTEIN
Ama22881POLY [ADP-RIBOSE] POLYMERASE
Ama22883NADP-SPECIFIC ISOCITRATE DEHYDROGENASE
Ama22884PLASMINOGEN-RELATED
Ama22885PLASMINOGEN-RELATED
Ama22887TETRASPANIN
Ama22888
Ama22889CYSTEINYL-TRNA SYNTHETASE
Ama22892
Ama22893TETRASPANIN
Ama2289452 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Ama22895
Ama22897SERINE/THREONINE-PROTEIN KINASE
Ama22898TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED
Ama22900TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Ama22901GH04784P
Ama22903
Ama22904
Ama22906PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
Ama22908LIN-9
Ama22909OPIOID GROWTH FACTOR RECEPTOR OGFR ZETA-TYPE OPIOID RECEPTOR
Ama22912HEAT SHOCK PROTEIN HSP-12.2-RELATED
Ama22915CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Ama22918NOTCH LIGAND FAMILY MEMBER
Ama22919NOTCH LIGAND FAMILY MEMBER
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