The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama22703 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
| Ama22707 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| Ama22708 | |
| Ama22710 | |
| Ama22711 | |
| Ama22712 | |
| Ama22713 | |
| Ama22714 | |
| Ama22715 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN |
| Ama22717 | |
| Ama22718 | |
| Ama22719 | PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED |
| Ama22720 | 1,4-ALPHA-GLUCAN-BRANCHING ENZYME |
| Ama22721 | TRANSMEMBRANE PROTEIN 101 |
| Ama22722 | UNCHARACTERIZED |
| Ama22723 | FATTY ACID ACYL TRANSFERASE-RELATED |
| Ama22724 | FATTY ACID ACYL TRANSFERASE-RELATED |
| Ama22725 | PUR-TRANSCRIPTIONAL ACTIVATOR |
| Ama22726 | RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS |
| Ama22728 | NF-E2 INDUCIBLE PROTEIN |
| Ama22729 | PROTEIN CBG23806 |
| Ama22730 | PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR |
| Ama22731 | |
| Ama22733 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| Ama22735 | |
| Ama22736 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| Ama22737 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama22738 | |
| Ama22739 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama22740 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama22741 | |
| Ama22744 | - |
| Ama22753 | |
| Ama22755 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Ama22756 | ATP-DEPENDENT DNA HELICASE |
| Ama22757 | |
| Ama22759 | CEREBELLIN-RELATED |
| Ama22760 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama22761 | UNCHARACTERIZED PROTEIN KIAA2013 |
| Ama22775 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
| Ama22776 | AGAP001331-PA-RELATED |
| Ama22777 | UNCHARACTERIZED |
| Ama22778 | AGAP001331-PA-RELATED |
| Ama22779 | UNCHARACTERIZED |
| Ama22780 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
| Ama22781 | |
| Ama22782 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
| Ama22783 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama22784 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Ama22785 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
