The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama22275 | HISTONE H4 |
| Ama22276 | POTASSIUM CHANNEL, SUBFAMILY K |
| Ama22277 | |
| Ama22278 | |
| Ama22279 | EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED |
| Ama22280 | MORN REPEAT-CONTAINING PROTEIN 3 |
| Ama22281 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Ama22283 | |
| Ama22285 | |
| Ama22286 | |
| Ama22287 | ACETOACETYL-COA SYNTHETASE |
| Ama22288 | |
| Ama22289 | |
| Ama22290 | |
| Ama22291 | |
| Ama22294 | |
| Ama22295 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama22296 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| Ama22297 | ATP-DEPENDENT DNA HELICASE |
| Ama22298 | THAP DOMAIN PROTEIN |
| Ama22299 | |
| Ama22300 | |
| Ama22301 | UNCHARACTERIZED |
| Ama22303 | |
| Ama22304 | |
| Ama22305 | THAP DOMAIN PROTEIN |
| Ama22306 | |
| Ama22307 | |
| Ama22308 | ACETOACETYL-COA SYNTHETASE |
| Ama22309 | MATRIX METALLOPROTEINASE |
| Ama22310 | MATRIX METALLOPROTEINASE |
| Ama22311 | F-BOX ONLY PROTEIN 3 |
| Ama22313 | - |
| Ama22314 | UNCHARACTERIZED NODULIN-LIKE PROTEIN |
| Ama22316 | |
| Ama22318 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama22319 | |
| Ama22320 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama22321 | |
| Ama22322 | G-PROTEIN COUPLED RECEPTOR |
| Ama22324 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Ama22331 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama22333 | |
| Ama22334 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Ama22335 | |
| Ama22336 | PUTATIVE-RELATED |
| Ama22338 | |
| Ama22342 | CONNECTIVE TISSUE GROWTH FACTOR-RELATED |
| Ama22343 | |
| Ama22345 | CCAAT DISPLACEMENT PROTEIN-RELATED |
