About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama22114SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Ama22120SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Ama22121SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Ama22122ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Ama22124AGAP001705-PA
Ama22125SPHINGOMYELIN PHOSPHODIESTERASE 4
Ama22126TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER
Ama22142
Ama22143
Ama22144DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Ama22145DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Ama22146
Ama22147
Ama22149UNCHARACTERIZED
Ama22151PROTEASE M14 CARBOXYPEPTIDASE
Ama22152
Ama22154
Ama22158CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama22159SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED
Ama22160
Ama22161
Ama22162FTP DOMAIN-CONTAINING PROTEIN
Ama22163FTP DOMAIN-CONTAINING PROTEIN
Ama22164SCAVENGER RECEPTOR CLASS F
Ama22165INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Ama22166GAMMA GLUTAMYL TRANSPEPTIDASE
Ama22167PROTEASE M14 CARBOXYPEPTIDASE
Ama22168PROTEASE M14 CARBOXYPEPTIDASE
Ama22171GAMMA GLUTAMYL TRANSPEPTIDASE
Ama22172SERINE/ARGININE REPETITIVE MATRIX PROTEIN 3-RELATED
Ama22173-
Ama22177GLYOXALASE DOMAIN-CONTAINING PROTEIN 4
Ama22179
Ama22180
Ama22181RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN
Ama22182
Ama22184
Ama22185RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Ama22186RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Ama22187ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Ama22190NEUROBLAST DIFFERENTIATION-ASSOCIATED PROTEIN AHNAK-LIKE PROTEIN
Ama22191DEATH DOMAIN-CONTAINING PROTEIN
Ama22192INHIBITOR OF APOPTOSIS
Ama22193RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Ama22194
Ama22195
Ama22198INHIBITOR OF APOPTOSIS
Ama22199RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Ama22200DEATH DOMAIN-CONTAINING PROTEIN
Ama22202PUTATIVE-RELATED
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