The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama21922 | |
| Ama21923 | |
| Ama21924 | |
| Ama21925 | |
| Ama21926 | ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED |
| Ama21927 | |
| Ama21928 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Ama21929 | THAP DOMAIN PROTEIN |
| Ama21930 | |
| Ama21931 | |
| Ama21932 | |
| Ama21933 | PEPTIDASE |
| Ama21938 | |
| Ama21939 | |
| Ama21940 | THO COMPLEX SUBUNIT 6 HOMOLOG |
| Ama21941 | N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE |
| Ama21942 | T COMPLEX PROTEIN 10 |
| Ama21943 | |
| Ama21944 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Ama21945 | UNCHARACTERIZED |
| Ama21946 | ENDOPLASMIC RETICULUM PROTEIN ERP29 |
| Ama21947 | T COMPLEX PROTEIN 10 |
| Ama21948 | |
| Ama21949 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
| Ama21950 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
| Ama21951 | |
| Ama21952 | |
| Ama21953 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| Ama21954 | |
| Ama21955 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| Ama21956 | |
| Ama21957 | ZGC:174356 |
| Ama21958 | TRANSPOSABLE ELEMENT-RELATED |
| Ama21959 | |
| Ama21960 | UNCHARACTERIZED |
| Ama21961 | TWO PORE CALCIUM CHANNEL PROTEIN 1 |
| Ama21962 | TWO PORE CALCIUM CHANNEL PROTEIN 1 |
| Ama21963 | P2X PURINOCEPTOR |
| Ama21965 | |
| Ama21966 | |
| Ama21967 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Ama21968 | CALCIUM BINDING PROTEINS |
| Ama21969 | TRANSPOSABLE ELEMENT-RELATED |
| Ama21970 | |
| Ama21971 | OPSIN |
| Ama21973 | GLUCOSE INHIBITED DIVISION PROTEIN A |
| Ama21976 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama21977 | |
| Ama21978 | NADH DEHYDROGENASE |
| Ama21979 | CYSTEINE PROTEASE FAMILY C1-RELATED |
