The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama21649 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama21650 | |
Ama21678 | ZGC:174356 |
Ama21679 | |
Ama21680 | |
Ama21681 | PHOSPHATIDYLINOSITOL KINASE |
Ama21682 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Ama21684 | |
Ama21688 | PUTATIVE-RELATED |
Ama21689 | |
Ama21690 | CYTOCHROME P450 FAMILY 4 |
Ama21691 | |
Ama21692 | GLYCOSYLTRANSFERASE |
Ama21693 | ANTIBIOTIC RESISTANCE PROTEIN MCBG |
Ama21696 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TRANSPORTER |
Ama21697 | DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 |
Ama21698 | |
Ama21699 | FRINGE-RELATED |
Ama216_5db7b01a | |
Ama21700 | TRANSMEMBRANE PROTEIN 199 |
Ama21701 | |
Ama21702 | |
Ama21703 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama21704 | ATP-DEPENDENT DNA HELICASE |
Ama21705 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama21707 | |
Ama21708 | PHOSPHATIDYLINOSITOL TRANSFER PROTEIN |
Ama21712 | |
Ama21713 | |
Ama21714 | SUPPRESSOR OF TY 4 |
Ama21715 | CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING |
Ama21716 | 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER |
Ama21717 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
Ama21718 | MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN |
Ama21719 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
Ama21721 | |
Ama21722 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama21723 | |
Ama21725 | MAJOR VAULT PROTEIN |
Ama21726 | |
Ama21727 | L-ASPARTATE DEHYDROGENASE-RELATED |
Ama21729 | G-PROTEIN COUPLED RECEPTOR |
Ama21731 | - |
Ama21734 | SI:CH211-108C17.2-RELATED-RELATED |
Ama21735 | DEOXYRIBONUCLEASE TATDN2-RELATED |
Ama21736 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Ama21737 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
Ama21738 | |
Ama21739 | |
Ama21740 | CALCIUM BINDING PROTEIN |