The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama21230 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Ama21231 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Ama21232 | TRANSPOSABLE ELEMENT-RELATED |
Ama21233 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Ama21234 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama21236 | |
Ama21237 | GAMMA GLUTAMYL TRANSPEPTIDASE |
Ama21238 | AP ENDONUCLEASE |
Ama21240 | |
Ama21241 | |
Ama21242 | |
Ama21243 | UNCHARACTERIZED |
Ama21244 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
Ama21245 | PROTEIN PHOSPHATASE |
Ama21246 | - |
Ama21247 | PROTEIN ABHD11 |
Ama21248 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
Ama21249 | UNCHARACTERIZED |
Ama21250 | HYDROLASE |
Ama21251 | CELL DEATH ACTIVATOR CIDE |
Ama21252 | SAPOSIN-RELATED |
Ama21253 | PROTEIN CBG16428 |
Ama21254 | ZINC FINGER PROTEIN |
Ama21255 | |
Ama21256 | PUTATIVE-RELATED |
Ama21257 | L1 TRANSPOSABLE ELEMENT-RELATED |
Ama21258 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
Ama21260 | OS01G0282866 PROTEIN |
Ama21261 | TUBULIN |
Ama21262 | |
Ama21263 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
Ama21264 | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED |
Ama21265 | UNNAMED PRODUCT |
Ama21266 | TRANSPOSABLE ELEMENT-RELATED |
Ama21267 | |
Ama21268 | LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN |
Ama21271 | |
Ama21276 | UNCHARACTERIZED |
Ama21277 | LEO1 PROTEIN |
Ama21278 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
Ama21279 | |
Ama21280 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama21281 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama21282 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Ama21283 | |
Ama21285 | PDZ AND LIM DOMAIN PROTEIN ZASP |
Ama21286 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
Ama21287 | RING ZINC FINGER |
Ama21288 | NOTCH LIGAND FAMILY MEMBER |
Ama21290 | DUF853 DOMAIN-CONTAINING PROTEIN |