The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama20823 | STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1 |
| Ama20824 | HERMANSKY-PUDLAK SYNDROME 4 PROTEIN LIGHT-EAR PROTEIN-RELATED |
| Ama20825 | G PATCH DOMAIN CONTAINING PROTEIN 3 |
| Ama20826 | OXYGENASE-RELATED |
| Ama20829 | WD-40 REPEAT PROTEIN |
| Ama20830 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
| Ama20831 | |
| Ama20832 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| Ama20836 | VITAMIN K EPOXIDE REDUCTASE COMPLEX, SUBUNIT 1 |
| Ama20837 | LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN |
| Ama20838 | |
| Ama20840 | LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1 |
| Ama20841 | UNCHARACTERIZED |
| Ama20842 | OLFACTOMEDIN-RELATED |
| Ama20847 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama20849 | NUCLEAR HORMONE RECEPTOR |
| Ama20851 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
| Ama20853 | |
| Ama20854 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama20855 | |
| Ama20857 | |
| Ama20858 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama20859 | |
| Ama20860 | CYTOCHROME P450 508A4-RELATED |
| Ama20861 | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED |
| Ama20862 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
| Ama20863 | |
| Ama20864 | |
| Ama20865 | A-KINASE ANCHOR PROTEINS |
| Ama20866 | TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED |
| Ama20868 | |
| Ama20870 | SERINE/THREONINE PROTEIN PHOSPHATASE |
| Ama20871 | SERINE/THREONINE PROTEIN PHOSPHATASE |
| Ama20874 | |
| Ama20875 | |
| Ama20876 | |
| Ama20877 | NEP1/MRA1 |
| Ama20878 | |
| Ama20881 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13 |
| Ama20883 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama20884 | ANTIGEN MLAA-22-RELATED |
| Ama20885 | |
| Ama20886 | ANTIGEN MLAA-22-RELATED |
| Ama20888 | |
| Ama20890 | |
| Ama20891 | |
| Ama20894 | SRCR DOMAIN-CONTAINING PROTEIN |
| Ama20895 | PROPERDIN |
| Ama20897 | |
| Ama20898 |
