The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama20612 | HYDROXYLAMINE REDUCTASE |
Ama20613 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
Ama20614 | - |
Ama20615 | NYD-SP28 PROTEIN |
Ama20616 | TRANSPOSABLE ELEMENT-RELATED |
Ama20618 | RING FINGER PROTEIN-RELATED |
Ama20619 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27 |
Ama20621 | |
Ama20623 | |
Ama20624 | |
Ama20625 | |
Ama20626 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama20627 | |
Ama20628 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama20629 | |
Ama20630 | PEPTIDASE |
Ama20631 | UBIQUITIN-PROTEIN LIGASE E3C |
Ama20633 | PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4 |
Ama20634 | PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4 |
Ama20635 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A |
Ama20636 | HISTIDINE-RICH GLYCOPROTEIN |
Ama20637 | MYOSIN LIGHT CHAIN 1, 3 |
Ama20638 | RH14732P |
Ama20639 | |
Ama20640 | RH14732P |
Ama20641 | BETA-1,4-GALACTOSYLTRANSFERASE |
Ama20642 | SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG |
Ama20643 | |
Ama20644 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama20645 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5 |
Ama20646 | BTB/POZ DOMAIN-CONTAINING |
Ama20647 | |
Ama20649 | BTB/POZ DOMAIN-CONTAINING |
Ama20650 | UNCHARACTERIZED |
Ama20651 | |
Ama20652 | TRNASE Z TRZ1 |
Ama20653 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
Ama20655 | CELL DIVISION PROTEIN KINASE |
Ama20656 | AGAP001331-PA-RELATED |
Ama20657 | STERILE20-LIKE KINASE, ISOFORM B-RELATED |
Ama20660 | 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT |
Ama20662 | 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT |
Ama20663 | PROTEIN ANKUB1 |
Ama20664 | HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 |
Ama20667 | |
Ama20668 | |
Ama20669 | |
Ama20671 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
Ama20672 | METABOTROPIC GLUTAMATE RECEPTOR |
Ama20674 | METABOTROPIC GLUTAMATE RECEPTOR |