The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama20332 | |
| Ama20333 | |
| Ama20334 | |
| Ama20335 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Ama20336 | |
| Ama20337 | IDURONATE 2-SULFATASE |
| Ama20338 | |
| Ama20340 | |
| Ama20341 | MITOGEN-ACTIVATED PROTEIN KINASE |
| Ama20343 | N-LYSINE METHYLTRANSFERASE KMT5A |
| Ama20344 | STRAWBERRY NOTCH-RELATED |
| Ama20357 | ZINC FINGER PROTEIN ZIC AND GLI |
| Ama20358 | TNF RECEPTOR ASSOCIATED FACTOR |
| Ama20360 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
| Ama20361 | |
| Ama20362 | |
| Ama20363 | |
| Ama20364 | |
| Ama20366 | |
| Ama20367 | |
| Ama20369 | |
| Ama20370 | |
| Ama20371 | |
| Ama20372 | |
| Ama20373 | |
| Ama20374 | |
| Ama20375 | |
| Ama20376 | |
| Ama20377 | |
| Ama20379 | |
| Ama20380 | |
| Ama20382 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| Ama20385 | E3 UBIQUITIN-PROTEIN LIGASE TRIM37 |
| Ama20386 | |
| Ama20387 | GAMETOGENETIN-BINDING PROTEIN 2 |
| Ama20388 | 14-3-3 PROTEIN |
| Ama20390 | |
| Ama20392 | |
| Ama20393 | |
| Ama20394 | |
| Ama20396 | VACUOLAR SORTING PROTEIN 53 |
| Ama20398 | |
| Ama20400 | |
| Ama20401 | |
| Ama20402 | BETA1,3-GALACTOSYLTRANSFERASE |
| Ama20403 | DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE |
| Ama20405 | DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE |
| Ama20407 | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
| Ama20414 | SEPTIN |
| Ama20416 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
