The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama19922 | |
| Ama19925 | ATP-DEPENDENT DNA HELICASE |
| Ama19926 | AGAP005574-PA |
| Ama19927 | |
| Ama19928 | OPSIN |
| Ama19930 | NEUROPEPTIDE Y RECEPTOR |
| Ama19931 | OPSIN |
| Ama19933 | OPSIN |
| Ama19935 | |
| Ama19936 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
| Ama19938 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
| Ama19939 | |
| Ama19941 | GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN |
| Ama19942 | UNIVERSAL STRESS PROTEIN SLR1230 |
| Ama19943 | |
| Ama19946 | FMRFAMIDE RECEPTOR-RELATED |
| Ama19947 | |
| Ama19951 | SLEI FAMILY PROTEIN |
| Ama19952 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
| Ama19953 | PRE-MRNA SPLICING FACTOR-RELATED |
| Ama19954 | |
| Ama19955 | SORTING NEXIN |
| Ama19957 | |
| Ama19958 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Ama19959 | BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 1 |
| Ama19960 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
| Ama19961 | |
| Ama19962 | SI:CH211-108C17.2-RELATED-RELATED |
| Ama19963 | SI:CH211-108C17.2-RELATED-RELATED |
| Ama19964 | ZGC:195170 |
| Ama19965 | |
| Ama19966 | |
| Ama19967 | NEUROTRANSMITTER GATED ION CHANNEL |
| Ama19968 | |
| Ama19969 | THAP DOMAIN PROTEIN |
| Ama19970 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Ama19971 | SI:DKEY-19B23.12-RELATED |
| Ama19972 | PUTATIVE-RELATED |
| Ama19973 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Ama19974 | AMINOMETHYLTRANSFERASE |
| Ama19975 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED |
| Ama19976 | |
| Ama19977 | |
| Ama19978 | |
| Ama19979 | INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN |
| Ama19980 | |
| Ama19981 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2-GAMMA |
| Ama19982 | RAD54-LIKE |
| Ama19984 | WD REPEAT DOMAIN-RELATED |
| Ama19985 | GLYCOSYLTRANSFERASE |
