About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama19704DUF614 FAMILY PROTEIN-RELATED
Ama19705TOLL-LIKE RECEPTOR
Ama19706SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Ama19707TMEM26 PROTEIN
Ama19708
Ama19709
Ama19710TNF RECEPTOR ASSOCIATED FACTOR
Ama19711REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama19714TETRASPANIN
Ama19716TESTIS-SPECIFIC Y-ENCODED PROTEIN
Ama19717UNCHARACTERIZED
Ama19719
Ama19720PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4
Ama19721PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4
Ama19722
Ama19725ADENOSYLHOMOCYSTEINASE
Ama19726
Ama19728ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1
Ama19729NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2
Ama19730CENTROMERE PROTEIN P
Ama19731FANCONI ANEMIA GROUP D2 PROTEIN
Ama19732FANCONI ANEMIA GROUP D2 PROTEIN
Ama19733
Ama19734DNA HELICASE-RELATED
Ama19735
Ama19736
Ama19737DNA HELICASE-RELATED
Ama19741NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2
Ama19745
Ama19746FACIOGENITAL DYSPLASIA PROTEIN
Ama19749ATP SYNTHASE GAMMA CHAIN
Ama19750
Ama19751
Ama19752MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B
Ama19753PRENYLTRANSFERASES
Ama19754CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5
Ama19755TRNA-DIHYDROURIDINE SYNTHASE
Ama19756SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED
Ama19758SYNAPTOPHYSIN
Ama19761
Ama19762SOLUTE CARRIER FAMILY 35
Ama19764LIM DOMAIN-CONTAINING PROTEIN
Ama19765LD33804P
Ama19767SERINE-THREONINE PROTEIN KINASE
Ama19768E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED
Ama19769POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3
Ama19770FORKHEAD BOX PROTEIN
Ama19772UNCHARACTERIZED
Ama19773TMEM26 PROTEIN
Ama19774TOLL-LIKE RECEPTOR
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