The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama19312 | LIM/HOMEOBOX PROTEIN LHX |
Ama19313 | |
Ama19314 | TRANSCRIPTIONAL REPRESSOR PROTEIN YY |
Ama19315 | ELONGATION FACTOR TU-RELATED |
Ama19316 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
Ama19317 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
Ama19318 | PHEROMONE SHUTDOWN PROTEIN |
Ama19320 | ADP-RIBOSYLGLYCOHYDROLASE |
Ama19321 | C3ORF1 PROTEIN-RELATED |
Ama19322 | C3ORF1 PROTEIN-RELATED |
Ama19323 | |
Ama19324 | ZINC FINGER PROTEIN |
Ama19325 | KELCH DOMAIN-CONTAINING PROTEIN 10 |
Ama19329 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
Ama19330 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
Ama19331 | - |
Ama19332 | SODIUM-BILE ACID COTRANSPORTER |
Ama19333 | T-CELL ACTIVATION INHIBITOR, MITOCHONDRIAL |
Ama19334 | ALANINE AMINOTRANSFERASE |
Ama19336 | |
Ama19338 | IP13529P |
Ama19340 | ADIPOR/PROGESTIN RECEPTOR-RELATED |
Ama19341 | |
Ama19343 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
Ama19344 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
Ama19345 | BONUS, ISOFORM C-RELATED |
Ama19346 | CALCIUM BINDING PROTEIN |
Ama19347 | |
Ama19348 | |
Ama19349 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama19350 | INHIBITOR OF APOPTOSIS |
Ama19351 | |
Ama19352 | |
Ama19353 | GLUTATHIONE S-TRANSFERASE |
Ama19354 | |
Ama19356 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Ama19357 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
Ama19361 | - |
Ama19362 | THREONINE SYNTHASE-LIKE 1 |
Ama19365 | MIX-TYPE HOMEOBOX GENE 1-RELATED |
Ama19366 | |
Ama19367 | CARBOHYDRATE SULFOTRANSFERASE |
Ama19368 | UBIQUITIN-CONJUGATING ENZYME E2 |
Ama19369 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
Ama19370 | 80 KDA MCM3-ASSOCIATED PROTEIN |
Ama19371 | |
Ama19372 | UNCHARACTERIZED |
Ama19373 | AGAP005574-PA |
Ama19374 | |
Ama19375 | IP13529P |