About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama18993
Ama18994EPHRIN TYPE-B RECEPTOR
Ama18996
Ama18998
Ama18999EPHRIN TYPE-B RECEPTOR
Ama18_5db7b01aGOLGIN SUBFAMILY A MEMBER-RELATED
Ama18_5db84494VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Ama19000EPHRIN TYPE-B RECEPTOR
Ama19001CEREBELLIN-RELATED
Ama19003GLUTATHIONE S-TRANSFERASE
Ama19004THREE PRIME REPAIR EXONUCLEASE 1, 2
Ama19005REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Ama19006SAM (S-ADENOSYL METHIONINE) TRANSPORTER
Ama19009PROTEIN SSUH2 HOMOLOG
Ama19012ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
Ama19013GLUTATHIONE S-TRANSFERASE
Ama19014RIBOSOMAL PROTEIN S7
Ama19015REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama19016PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama19018E3 UBIQUITIN-PROTEIN LIGASE RNF180
Ama19019UNCHARACTERIZED
Ama19020DYSTROGLYCAN-RELATED
Ama19021ZNF44 PROTEIN
Ama19023DNA2/NAM7 HELICASE FAMILY
Ama19024CENTROMERE PROTEIN K
Ama19025NG5
Ama19026
Ama19027ACTIN
Ama19029VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
Ama19030VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
Ama19031VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
Ama19033
Ama19034THYROTROPH EMBRYONIC FACTOR RELATED
Ama19035
Ama19038MYOSUPPRESSIN RECEPTOR 1, ISOFORM B-RELATED
Ama19042GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Ama19043ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1
Ama19044
Ama19045MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Ama19046APPLE DOMAIN-CONTAINING PROTEIN
Ama19048
Ama19049
Ama19050CHITIN SYNTHASE
Ama19051CHITIN SYNTHASE
Ama19052
Ama19053CADHERIN-23
Ama19054FAT ATYPICAL CADHERIN-RELATED
Ama19055FAT ATYPICAL CADHERIN-RELATED
Ama19056CADHERIN-23
Ama19058-
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