The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama18536 | PROTEIN CBG17025 |
| Ama18538 | |
| Ama18540 | SI:DKEY-57N24.6 |
| Ama18544 | |
| Ama18545 | |
| Ama18548 | |
| Ama18552 | |
| Ama18553 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 |
| Ama18554 | VILLIN |
| Ama18556 | |
| Ama18557 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama18562 | FILAMIN/GPBP-INTERACTING PROTEIN |
| Ama18564 | COLLAGEN ALPHA |
| Ama18570 | |
| Ama18571 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
| Ama18572 | |
| Ama18574 | HISTIDINE-RICH GLYCOPROTEIN |
| Ama18575 | PORCUPINE |
| Ama18577 | CAMK FAMILY PROTEIN KINASE |
| Ama18578 | SERINE/THREONINE-PROTEIN KINASE NEK |
| Ama18581 | OPSIN |
| Ama18582 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Ama18585 | |
| Ama18588 | IKB KINASE |
| Ama18589 | ALPHA-1,2-GLUCOSYLTRANSFERASE ALG10 |
| Ama18590 | COPINE |
| Ama18591 | CONSTITUTIVE COACTIVATOR OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA |
| Ama18592 | PROTEIN-LYSINE N-METHYLTRANSFERASE METTL10 |
| Ama18594 | RAB FAMILY |
| Ama18596 | |
| Ama18597 | |
| Ama18598 | EXPORTIN-T/LOS1 |
| Ama18599 | DEDICATOR OF CYTOKINESIS |
| Ama185_5db7b01a | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Ama18602 | |
| Ama18603 | WNT RELATED |
| Ama18607 | UPF0722 PROTEIN C11ORF88 |
| Ama18609 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| Ama18611 | |
| Ama18612 | |
| Ama18613 | |
| Ama18616 | |
| Ama18617 | |
| Ama18621 | - |
| Ama18622 | SERINE/THREONINE-PROTEIN KINASE TAO |
| Ama18624 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Ama18627 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama18628 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
| Ama18631 | PUTATIVE-RELATED |
| Ama18632 |
