The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama18259 | UNCHARACTERIZED |
| Ama18261 | ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR |
| Ama18262 | |
| Ama18263 | RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN |
| Ama18264 | |
| Ama18265 | RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN |
| Ama18266 | CYCLIN D1-BINDING PROTEIN 1 |
| Ama18267 | |
| Ama18268 | |
| Ama18271 | DNA2/NAM7 HELICASE FAMILY |
| Ama18272 | SYNTROPHIN |
| Ama18273 | SOLUBLE NSF ATTACHMENT PROTEIN SNAP |
| Ama18274 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
| Ama18277 | TETRATRICOPEPTIDE REPEAT PROTEIN 5 |
| Ama18278 | DUAL SPECIFICITY PROTEIN PHOSPHATASE DDB_G0269404-RELATED |
| Ama18279 | RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN |
| Ama18280 | |
| Ama18281 | |
| Ama18282 | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED |
| Ama18283 | AMINO ACID TRANSPORTER |
| Ama18284 | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
| Ama18285 | |
| Ama18287 | |
| Ama18288 | |
| Ama18289 | CYTOCHROME C OXIDASE SUBUNIT IV |
| Ama18292 | DYSTROBREVIN BINDING PROTEIN 1 DYSBINDIN |
| Ama18293 | TRANSMEMBRANE PROTEIN 64 |
| Ama18296 | MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 |
| Ama18297 | |
| Ama18298 | |
| Ama18299 | |
| Ama182_5db7b01a | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| Ama18300 | BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN |
| Ama18301 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 |
| Ama18302 | CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL |
| Ama18303 | SOLUTE CARRIER FAMILY 35 |
| Ama18304 | EXOSOME COMPLEX COMPONENT |
| Ama18305 | APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS |
| Ama18306 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Ama18307 | |
| Ama18308 | APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS |
| Ama18309 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama18311 | |
| Ama18312 | TARGETING PROTEIN FOR XKLP2 |
| Ama18315 | MTG8 ETO EIGHT TWENTY ONE PROTEIN |
| Ama18317 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| Ama18318 | PROTEIN PHOSPHATASE 2C |
| Ama18319 | CASEIN KINASE-RELATED |
| Ama18320 | RNA POLYMERASE II CTD PHOSPHATASE |
| Ama18322 | TATA-BOX BINDING PROTEIN |
