The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama18195 | |
| Ama18196 | |
| Ama18197 | UNCHARACTERIZED |
| Ama18198 | LORICRIN |
| Ama18199 | |
| Ama181_5db7b01a | PROTEIN ABHD18 |
| Ama18200 | SCAVENGER RECEPTOR CLASS F |
| Ama18201 | PROTEIN CBG22215 |
| Ama18202 | |
| Ama18204 | FTP DOMAIN-CONTAINING PROTEIN |
| Ama18206 | SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL |
| Ama18207 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| Ama18208 | |
| Ama18209 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Ama18211 | YALI0E18722P |
| Ama18213 | FMRFAMIDE RECEPTOR-RELATED |
| Ama18214 | PUTATIVE-RELATED |
| Ama18215 | FMRFAMIDE RECEPTOR-RELATED |
| Ama18216 | |
| Ama18217 | O-ACYLTRANSFERASE |
| Ama18218 | |
| Ama18219 | O-ACYLTRANSFERASE |
| Ama18220 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| Ama18221 | UNC-93 RELATED |
| Ama18222 | SODIUM-BILE ACID COTRANSPORTER |
| Ama18223 | CRANIOFACIAL DEVELOPMENT PROTEIN 1 |
| Ama18226 | GDAP1, ISOFORM A |
| Ama18227 | |
| Ama18228 | TYROSINASE FAMILY MEMBER |
| Ama18229 | |
| Ama18230 | |
| Ama18231 | N4BP1-RELATED |
| Ama18232 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| Ama18235 | OXA1 |
| Ama18236 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| Ama18238 | |
| Ama18239 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Ama18241 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
| Ama18242 | |
| Ama18244 | UNCHARACTERIZED |
| Ama18246 | |
| Ama18247 | PROTEIN FAM221A-RELATED |
| Ama18248 | |
| Ama18249 | ATP-DEPENDENT DNA HELICASE |
| Ama18251 | BEIGE/BEACH-RELATED |
| Ama18252 | DIHYDRODIPICOLINATE SYNTHASE |
| Ama18253 | |
| Ama18254 | |
| Ama18257 | |
| Ama18258 | UNCHARACTERIZED |
