The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama17942 | ADENOSYLHOMOCYSTEINASE |
Ama17943 | VACUOLAR ATP SYNTHASE SUBUNIT AC39 |
Ama17944 | |
Ama17945 | TWISTED GASTRULATION PROTEIN HOMOLOG 1-A-RELATED |
Ama17948 | |
Ama17949 | GLUCOSE-6-PHOSPHATE ISOMERASE |
Ama17950 | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
Ama17951 | SCAVENGER RECEPTOR CLASS F |
Ama17952 | |
Ama17953 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
Ama17954 | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
Ama17955 | TESTIS, PROSTATE AND PLACENTA-EXPRESSED PROTEIN |
Ama17956 | |
Ama17958 | |
Ama17959 | HEAT SHOCK TRANSCRIPTION FACTOR |
Ama17960 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 61F |
Ama17961 | AQUAPORIN TRANSPORTER |
Ama17962 | AQUAPORIN TRANSPORTER |
Ama17966 | TRANSPOSON |
Ama17967 | N-LYSINE METHYLTRANSFERASE KMT5A |
Ama17969 | AQUAPORIN TRANSPORTER |
Ama17970 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama17973 | SCAVENGER RECEPTOR CLASS F |
Ama17974 | AQUAPORIN TRANSPORTER |
Ama17975 | AQUAPORIN TRANSPORTER |
Ama17976 | AQUAPORIN TRANSPORTER |
Ama17977 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama17978 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT |
Ama17979 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7 |
Ama17980 | HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UNIQUITIN-LIKE DOMAIN HERPUD PROTEIN FAMILY MEMBER |
Ama17981 | KINESIN-LIKE PROTEIN KLP-3 |
Ama17983 | PHOSPHOETHANOLAMINE METHYLTRANSFERASE |
Ama17984 | |
Ama17986 | REVERSE TRANSCRIPTASES |
Ama17987 | EAP30 SUBUNIT OF ELL COMPLEX |
Ama17988 | DRAB11-RELATED |
Ama17989 | REGULATOR-RELATED |
Ama17990 | TRANSMEMBRANE PROTEIN 208 |
Ama17991 | |
Ama17992 | |
Ama17993 | COLLAGEN ALPHA |
Ama17994 | COLLAGEN ALPHA |
Ama17996 | LEUCINE AMINOPEPTIDASE-RELATED |
Ama17997 | CORTACTIN AND DREBRIN |
Ama17998 | VALACYCLOVIR HYDROLASE |
Ama17999 | DIMETHYLANILINE MONOOXYGENASE |
Ama179_5db7b01a | CALCIUM BINDING PROTEINS |
Ama17_5db7b01a | SUSHI DOMAIN-CONTAINING PROTEIN |
Ama17_5db84494 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
Ama18000 | OXIDASE/PEROXIDASE |