The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama18072 | CARBONIC ANHYDRASE |
Ama18073 | CARBONIC ANHYDRASE |
Ama18076 | |
Ama18077 | G-PROTEIN COUPLED RECEPTOR |
Ama18078 | G-PROTEIN COUPLED RECEPTOR |
Ama18079 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
Ama18081 | F-BOX FAMILY PROTEIN |
Ama18082 | ATM INTERACTOR |
Ama18083 | SPIRE |
Ama18084 | WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER |
Ama18085 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
Ama18087 | COLLAGEN ALPHA |
Ama18088 | COLLAGEN ALPHA |
Ama18089 | COLLAGEN ALPHA |
Ama18090 | |
Ama18091 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
Ama18092 | MALONYL-COA ACP TRANSACYLASE, ACP-BINDING |
Ama18093 | |
Ama18094 | |
Ama18095 | UPF0183 PROTEIN |
Ama18096 | CORE-BINDING FACTOR, BETA SUBUNIT |
Ama18098 | HISTONE H3 |
Ama18099 | HISTONE H2B |
Ama180_5db7b01a | ZINC FINGER PROTEIN |
Ama18100 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
Ama18101 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 |
Ama18104 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
Ama18106 | ANKYRIN REPEAT FAMILY PROTEIN |
Ama18107 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama18109 | - |
Ama18111 | UNCHARACTERIZED |
Ama18112 | UNCHARACTERIZED |
Ama18113 | AAA DOMAIN-CONTAINING |
Ama18114 | |
Ama18117 | IDURONATE 2-SULFATASE |
Ama18118 | TRANSPOSON |
Ama18119 | |
Ama18120 | |
Ama18122 | PUTATIVE-RELATED |
Ama18124 | |
Ama18125 | |
Ama18126 | PIG-M MANNOSYLTRANSFERASE |
Ama18127 | UPF0598 PROTEIN C8ORF82 |
Ama18129 | KATANIN P80 SUBUNIT |
Ama18130 | LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED |
Ama18131 | LYSINE-SPECIFIC DEMETHYLASE |
Ama18132 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27 |
Ama18133 | AUGMIN SUBUNIT 4 FAMILY MEMBER |
Ama18134 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
Ama18135 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |