The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama18001 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
Ama18004 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
Ama18005 | EPITHELIAL MEMBRANE PROTEIN-RELATED |
Ama18007 | DNA LIGASE |
Ama18008 | DNA LIGASE |
Ama18009 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama18010 | ZINC FINGER PROTEIN 142 |
Ama18011 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT |
Ama18012 | DNA-DIRECTED RNA POLYMERASE |
Ama18013 | COILED-COIL DOMAIN-CONTAINING PROTEIN 84 |
Ama18016 | CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN |
Ama18017 | HEH2P |
Ama18020 | |
Ama18021 | FRIEND OF GATA2-RELATED |
Ama18022 | |
Ama18023 | |
Ama18024 | CALCIUM-TRANSPORTING ATPASE |
Ama18025 | CALCIUM-TRANSPORTING ATPASE |
Ama18026 | |
Ama18027 | 50S RIBOSOMAL PROTEIN L3 |
Ama18028 | RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3 |
Ama18029 | CYCLINS |
Ama18030 | ZGC:162297 |
Ama18035 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
Ama18040 | UNCHARACTERIZED |
Ama18041 | |
Ama18042 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
Ama18043 | |
Ama18044 | |
Ama18045 | UNCHARACTERIZED |
Ama18046 | |
Ama18048 | LEUCOKININ RECEPTOR-RELATED |
Ama18052 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama18053 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama18054 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama18055 | D-AMINO ACID OXIDASE |
Ama18056 | ACYL-COA SYNTHETASE |
Ama18057 | PURPLE ACID PHOSPHATASE |
Ama18058 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
Ama18060 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
Ama18061 | |
Ama18062 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama18063 | THYROTROPIN-RELEASING HORMONE RECEPTOR |
Ama18064 | G-PROTEIN COUPLED RECEPTOR |
Ama18065 | |
Ama18066 | UNCHARACTERIZED |
Ama18067 | CARBONIC ANHYDRASE |
Ama18069 | CARBONIC ANHYDRASE |
Ama18070 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM |
Ama18071 | CARBONIC ANHYDRASE |