The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama17731 | TYROSINASE FAMILY MEMBER |
Ama17732 | ZINC FINGER PROTEIN |
Ama17744 | METABOTROPIC GLUTAMATE RECEPTOR |
Ama17745 | METABOTROPIC GLUTAMATE RECEPTOR |
Ama17746 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
Ama17747 | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
Ama17748 | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED |
Ama17749 | TRANSPORT PROTEIN TRAPP |
Ama17750 | TRANSPORT PROTEIN TRAPP |
Ama17751 | |
Ama17752 | CCHC-TYPE DOMAIN-CONTAINING PROTEIN |
Ama17753 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
Ama17754 | |
Ama17755 | NUCLEAR HORMONE RECEPTOR |
Ama17756 | |
Ama17757 | PHD FINGER PROTEIN 20-RELATED |
Ama17758 | |
Ama17762 | AQUAPORIN TRANSPORTER |
Ama17763 | SERINE/ARGININE RICH SPLICING FACTOR |
Ama17764 | ORF PROTEIN |
Ama17765 | RNA_LIG_T4_1 DOMAIN-CONTAINING PROTEIN |
Ama17766 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED |
Ama17767 | UNC-93 RELATED |
Ama17769 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
Ama17770 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
Ama17771 | DIMETHYLANILINE MONOOXYGENASE |
Ama17772 | |
Ama17773 | UNCHARACTERIZED |
Ama17774 | NIBRIN-RELATED |
Ama17775 | |
Ama17776 | |
Ama17777 | |
Ama17778 | G PATCH DOMAIN-CONTAINING PROTEIN 1 |
Ama17780 | NEFA-INTERACTING NUCLEAR PROTEIN NIP30 |
Ama17781 | NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNIT |
Ama17782 | |
Ama17784 | |
Ama17785 | |
Ama17786 | ARRESTIN DOMAIN CONTAINING PROTEIN |
Ama17787 | 5-OXOPROLINASE RELATED |
Ama17788 | 5-OXOPROLINASE RELATED |
Ama17789 | |
Ama17790 | 5-OXOPROLINASE RELATED |
Ama17791 | |
Ama17795 | OVOCHYMASE-RELATED |
Ama17797 | |
Ama17798 | AMINO ACID TRANSPORTER |
Ama17799 | AMINO ACID TRANSPORTER |
Ama17801 | E3 UBIQUITIN-PROTEIN LIGASE RNF8 |
Ama17802 | ZINC FINGER PROTEIN |