About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama17663
Ama17664
Ama17665NF-KAPPA-B INHIBITOR ALPHA
Ama17666TNF RECEPTOR ASSOCIATED FACTOR
Ama17668GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN
Ama17669CYTOCHROME C1
Ama1767252 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Ama17673OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED
Ama17674TETRATRICOPEPTIDE REPEAT PROTEIN 22
Ama17677THIOESTERASE
Ama17678CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama17679CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama17680PHD-TYPE DOMAIN-CONTAINING PROTEIN
Ama17681RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Ama17682INHIBITOR OF APOPTOSIS
Ama17683INHIBITOR OF APOPTOSIS
Ama17684RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Ama17685GUANYLYL CYCLASE
Ama17686SAM-DEPENDENT METHYLTRANSFERASE
Ama17687WD REPEAT-CONTAINING PROTEIN POP1
Ama17688EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3
Ama17690SERINE/THREONINE-PROTEIN KINASE PIM
Ama17691
Ama17692ADAPTIN, ALPHA/GAMMA/EPSILON
Ama17693IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX
Ama17696GLUTATHIONE SYNTHETASE
Ama17697UBIQUITIN-CONJUGATING ENZYME E2
Ama17698LD33804P
Ama17699FG-GAP REPEAT-CONTAINING PROTEIN
Ama17701REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama17702PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED
Ama17705
Ama17706
Ama17708SRCR DOMAIN-CONTAINING PROTEIN
Ama17710
Ama17711EGF-LIKE DOMAIN-CONTAINING PROTEIN
Ama17712CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Ama17713
Ama17714
Ama17715ZINC FINGER PROTEIN
Ama17716CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Ama17718PREFOLDIN SUBUNIT 4
Ama17719NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Ama17720FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Ama17722
Ama17723CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 2
Ama17725PHENYLALANYL-TRNA SYNTHETASE
Ama17726PROTEIN C6ORF149
Ama17727TRANSCRIPTION FACTOR E2F
Ama17730TRANSIENT RECEPTOR POTENTIAL CHANNEL
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