The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama18323 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama18324 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama18325 | |
| Ama18327 | ANKYRIN REPEAT PROTEIN |
| Ama18328 | LEUKOCYTE RECEPTOR CLUSTER MEMBER 9 |
| Ama18330 | LEUKOCYTE RECEPTOR CLUSTER MEMBER 9 |
| Ama18335 | |
| Ama18338 | DNA-REPAIR PROTEIN XRCC1 |
| Ama18339 | |
| Ama18340 | ATP-DEPENDENT DNA HELICASE |
| Ama18341 | |
| Ama18342 | |
| Ama18343 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
| Ama18344 | UNCHARACTERIZED |
| Ama18346 | UBIQUITIN-ACTIVATING ENZYME E1 |
| Ama18347 | PRA1 PROTEIN |
| Ama18348 | CAVEOLIN |
| Ama18350 | COLLAGEN ALPHA |
| Ama18351 | COLLAGEN ALPHA |
| Ama18353 | CAVEOLIN |
| Ama18354 | CAVEOLIN |
| Ama18355 | CAVEOLIN |
| Ama18356 | CAVEOLIN |
| Ama18357 | CAVEOLIN |
| Ama18358 | CAVEOLIN |
| Ama18359 | INHIBITOR OF APOPTOSIS |
| Ama18360 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama18361 | CAVEOLIN |
| Ama18364 | CAVEOLIN |
| Ama18365 | CAVEOLIN |
| Ama18366 | CAVEOLIN |
| Ama18368 | CAVEOLIN |
| Ama18370 | |
| Ama18371 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Ama18372 | THAP DOMAIN PROTEIN |
| Ama18373 | |
| Ama18374 | MITOCHONDRIAL RIBOSOMAL PROTEIN S25 |
| Ama18376 | ARMADILLO REPEAT CONTAINING PROTEIN |
| Ama18377 | |
| Ama18378 | METHYLTRANSFERASE |
| Ama18379 | ARGININE/SERINE-RICH PROTEIN PNISR |
| Ama18380 | NEUROLIGIN |
| Ama18381 | NEUROLIGIN |
| Ama18383 | NEUROLIGIN |
| Ama18384 | NEUROLIGIN |
| Ama18385 | SOLUTE CARRIER FAMILY 35 |
| Ama18386 | |
| Ama18388 | |
| Ama18389 | GLYCOSYLTRANSFERASE |
| Ama18391 | SI:CH211-196P9.1-RELATED |
