The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama18839 | RIB43A-RELATED |
Ama18840 | UBIQUITIN-ACTIVATING ENZYME E1 |
Ama18841 | METABOTROPIC GLUTAMATE RECEPTOR |
Ama18842 | ALPHA-MANNOSIDASE |
Ama18843 | |
Ama18844 | |
Ama18848 | COILED-COIL DOMAIN-CONTAINING PROTEIN 3 |
Ama18849 | BRAIN PROTEIN I3 |
Ama18858 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama18859 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama18860 | ANTIGEN BSP, PUTATIVE-RELATED |
Ama18861 | TRANSPOSON |
Ama18862 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12 |
Ama18863 | RUVB-RELATED REPTIN AND PONTIN |
Ama18864 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama18865 | |
Ama18866 | DEFERROCHELATASE/PEROXIDASE |
Ama18868 | CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED |
Ama18869 | FUKUTIN RELATED PROTEIN |
Ama18872 | TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE |
Ama18873 | EPHRIN TYPE-B RECEPTOR |
Ama18875 | |
Ama18876 | EPHRIN TYPE-B RECEPTOR |
Ama18877 | |
Ama18878 | EPHRIN TYPE-B RECEPTOR |
Ama18879 | |
Ama18881 | NUCLEAR FACTOR NF-KAPPA-B PROTEIN |
Ama18882 | |
Ama18888 | TRANSCRIPTION FACTOR GATA FAMILY MEMBER |
Ama18889 | |
Ama18890 | TETRASPANIN |
Ama18891 | USP DOMAIN-CONTAINING PROTEIN |
Ama18892 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7 |
Ama18895 | |
Ama18896 | RNA 2',3'-CYCLIC PHOSPHODIESTERASE |
Ama18897 | LEUKOCYTE RECEPTOR CLUSTER MEMBER 9 |
Ama18898 | LEUKOCYTE RECEPTOR CLUSTER MEMBER 9 |
Ama188_5db7b01a | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
Ama18900 | SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED |
Ama18901 | INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN |
Ama18902 | SERINE/THREONINE-PROTEIN KINASE PIM |
Ama18903 | SERINE/THREONINE-PROTEIN KINASE PIM |
Ama18910 | SERINE/THREONINE-PROTEIN KINASE PIM |
Ama18911 | |
Ama18912 | RNA 2',3'-CYCLIC PHOSPHODIESTERASE |
Ama18913 | LEUKOCYTE RECEPTOR CLUSTER MEMBER 9 |
Ama18914 | LEUKOCYTE RECEPTOR CLUSTER MEMBER 9 |
Ama18916 | |
Ama18917 | |
Ama18918 |