The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama18919 | PIERCE HOMOLOG |
Ama18920 | |
Ama18923 | IKB KINASE |
Ama18924 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama18925 | |
Ama18926 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
Ama18927 | GAMMA-SECRETASE-ACTIVATING PROTEIN |
Ama18928 | BETA-HEXOSAMINIDASE |
Ama18929 | KELCH PROTEIN |
Ama18930 | |
Ama18933 | CYSTEINE PROTEASE FAMILY C1-RELATED |
Ama18934 | PLEXIN |
Ama18935 | PLEXIN |
Ama18936 | PLEXIN |
Ama18938 | |
Ama18939 | G-PROTEIN COUPLED RECEPTOR |
Ama18940 | |
Ama18941 | UNCHARACTERIZED |
Ama18942 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
Ama18943 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
Ama18944 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
Ama18947 | |
Ama18948 | GLUTAMATE RECEPTOR-INTERACTING PROTEIN GRIP |
Ama18950 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
Ama18951 | |
Ama18952 | TYROSINE PHOSPHATSE N18, PUTATIVE-RELATED |
Ama18955 | |
Ama18959 | AUTOSOMAL HIGHLY CONSERVED PROTEIN |
Ama18960 | TRANSPOSABLE ELEMENT-RELATED |
Ama18961 | CENTROSOMAL PROTEIN OF 41 KDA |
Ama18963 | UNCHARACTERIZED |
Ama18970 | |
Ama18971 | SULFOQUINOVOSIDASE |
Ama18972 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama18973 | TATA-BOX BINDING PROTEIN |
Ama18974 | |
Ama18975 | |
Ama18976 | CARBOHYDRATE SULFOTRANSFERASE |
Ama18977 | INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER |
Ama18978 | |
Ama18979 | INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER |
Ama18980 | CARBOHYDRATE SULFOTRANSFERASE |
Ama18981 | PEPTIDASE |
Ama18982 | INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER |
Ama18983 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Ama18984 | MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN |
Ama18986 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
Ama18990 | TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE |
Ama18991 | EPHRIN TYPE-B RECEPTOR |
Ama18992 | EPHRIN TYPE-B RECEPTOR |