The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama20126 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama20127 | CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP |
Ama20128 | CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP |
Ama20129 | |
Ama20131 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama20132 | |
Ama20133 | PUTATIVE-RELATED |
Ama20134 | BTB/POZ DOMAIN-CONTAINING |
Ama20135 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
Ama20137 | |
Ama20138 | |
Ama20139 | |
Ama20140 | VERTNIN |
Ama20141 | |
Ama20142 | |
Ama20144 | PUTATIVE-RELATED |
Ama20145 | SECY/SEC61-ALPHA FAMILY MEMBER |
Ama20146 | NUCLEAR RESPIRATORY FACTOR 1 |
Ama20147 | ZINC FINGER PROTEIN 277 |
Ama20148 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 10 |
Ama20151 | SARCOMA ANTIGEN NY-SAR-95-RELATED |
Ama20152 | |
Ama20153 | |
Ama20154 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
Ama20155 | EXS-RELATED PROTEIN |
Ama20156 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama20157 | THAP DOMAIN PROTEIN |
Ama20159 | PROTEIN DD3-3 |
Ama20160 | SERINE PEPTIDASE S9 FAMILY MEMBER |
Ama20161 | RIBONUCLEASE P PROTEIN SUBUNIT P38 |
Ama20162 | CALCIUM-BINDING PROTEIN 8-RELATED |
Ama20163 | |
Ama20169 | TRANSPOSON |
Ama20170 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama20171 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama20172 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama20173 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
Ama20174 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
Ama20175 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
Ama20177 | - |
Ama20181 | |
Ama20182 | THAP DOMAIN PROTEIN |
Ama20183 | TRANSMEMBRANE PROTEIN 121B |
Ama20184 | ODD-SKIPPED - RELATED |
Ama20185 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama20186 | |
Ama20187 | |
Ama20189 | |
Ama20190 | SI:CH211-196P9.1-RELATED |
Ama20191 |