The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama20260 | |
| Ama20261 | |
| Ama20263 | |
| Ama20264 | |
| Ama20265 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama20266 | |
| Ama20267 | AGAP005574-PA |
| Ama20268 | ATP-DEPENDENT DNA HELICASE |
| Ama20269 | |
| Ama20270 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Ama20271 | |
| Ama20274 | SENTRIN-SPECIFIC PROTEASE 8 |
| Ama20276 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Ama20277 | |
| Ama20278 | |
| Ama20284 | |
| Ama20285 | |
| Ama20286 | |
| Ama20289 | - |
| Ama20290 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama20292 | 26S PROTESOME SUBUNIT 6 |
| Ama20293 | CARBOXYLESTERASE |
| Ama20294 | |
| Ama20295 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Ama20296 | |
| Ama20297 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Ama20298 | |
| Ama202_5db7b01a | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
| Ama20300 | |
| Ama20301 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM |
| Ama20302 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| Ama20304 | NUCLEOREDOXIN |
| Ama20306 | TECTONIC FAMILY MEMBER |
| Ama20307 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| Ama20308 | CYSTATIN |
| Ama20309 | SETA BINDING PROTEIN 1 |
| Ama20310 | |
| Ama20311 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
| Ama20312 | ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED |
| Ama20313 | BETA-GLUCURONIDASE |
| Ama20314 | BETA-GLUCURONIDASE |
| Ama20316 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
| Ama20318 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| Ama20319 | |
| Ama20323 | UNC-93 RELATED |
| Ama20325 | |
| Ama20326 | OPSIN |
| Ama20328 | |
| Ama20329 | PROTEIN CBG22215 |
| Ama20331 | TRANSPOSABLE ELEMENT-RELATED |
