The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama20193 | ZINC FINGER PROTEIN |
| Ama20194 | ZINC FINGER PROTEIN |
| Ama20195 | SMALL LYSINE-RICH PROTEIN 1 |
| Ama20196 | ATP-DEPENDENT RNA HELICASE |
| Ama20197 | ATP-DEPENDENT RNA HELICASE |
| Ama20198 | ATP-DEPENDENT RNA HELICASE |
| Ama20199 | |
| Ama20202 | |
| Ama20203 | |
| Ama20204 | MIR DOMAIN-CONTAINING PROTEIN |
| Ama20205 | VEZATIN |
| Ama20206 | |
| Ama20207 | RYANODINE RECEPTOR AND IP3 RECEPTOR |
| Ama20208 | |
| Ama20209 | ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 |
| Ama20210 | |
| Ama20211 | |
| Ama20212 | |
| Ama20217 | |
| Ama20218 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Ama20219 | ALPHA-L-FUCOSIDASE |
| Ama20221 | |
| Ama20222 | ALPHA-L-FUCOSIDASE |
| Ama20223 | USP DOMAIN-CONTAINING PROTEIN |
| Ama20224 | USP DOMAIN-CONTAINING PROTEIN |
| Ama20225 | |
| Ama20226 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama20227 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama20228 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Ama20229 | |
| Ama20230 | |
| Ama20231 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama20232 | ANKYRIN REPEAT PROTEIN |
| Ama20233 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
| Ama20236 | RASSF |
| Ama20238 | |
| Ama20239 | IMPORTIN-7, 8, 11 |
| Ama20241 | RIBOPHORIN I |
| Ama20244 | ZINC FINGER PROTEIN RLF |
| Ama20246 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Ama20248 | |
| Ama20249 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Ama20250 | |
| Ama20251 | |
| Ama20253 | |
| Ama20254 | |
| Ama20255 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Ama20256 | |
| Ama20257 | UNCHARACTERIZED |
| Ama20258 | UNCHARACTERIZED |
