The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama20755 | CORONIN |
Ama20756 | |
Ama20757 | AP1 GAMMA SUBUNIT BINDING PROTEIN 1 |
Ama20758 | |
Ama20759 | DEOXYRIBONUCLEASE TATDN2-RELATED |
Ama20760 | PROTEIN DISPATCHED-RELATED |
Ama20761 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama20762 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama20763 | PROTEIN DISPATCHED-RELATED |
Ama20765 | |
Ama20767 | PROTEIN DISPATCHED-RELATED |
Ama20768 | |
Ama20771 | PROTEIN DISPATCHED-RELATED |
Ama20772 | |
Ama20773 | OPSIN |
Ama20774 | SODIUM/NUCLEOSIDE COTRANSPORTER |
Ama20775 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama20776 | |
Ama20777 | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 |
Ama20779 | |
Ama20781 | EXPRESSED PROTEIN |
Ama20782 | |
Ama20785 | INTEGRAL MEMBRANE PROTEIN DGCR2/IDD |
Ama20786 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama20787 | INHIBITOR OF APOPTOSIS |
Ama20788 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama20789 | |
Ama20790 | |
Ama20792 | TRANSLATION FACTOR |
Ama20797 | |
Ama20798 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama20799 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama207_5db7b01a | RIBOSOME BIOGENESIS PROTEIN BRIX |
Ama20800 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama20801 | SERINE INCORPORATOR |
Ama20802 | ACYL-COA-BINDING PROTEIN, ACBP |
Ama20804 | |
Ama20805 | GLUTATHIONE S-TRANSFERASE |
Ama20806 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama20807 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama20808 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama20809 | |
Ama20810 | |
Ama20811 | ELONGATION FACTOR TU-RELATED |
Ama20812 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED |
Ama20813 | COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN |
Ama20815 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
Ama20816 | NUCLEAR RECEPTOR CO-REPRESSOR RELATED NCOR |
Ama20819 | TUBULIN |
Ama20820 | BETA TRANSDUCIN-RELATED PROTEIN |