The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama16223 | CAMK FAMILY PROTEIN KINASE |
Ama16224 | UNCHARACTERIZED |
Ama16225 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
Ama16226 | |
Ama16228 | CAMP-BINDING PROTEIN 1-RELATED |
Ama16229 | |
Ama16230 | |
Ama16232 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama16233 | |
Ama16234 | ATP-DEPENDENT DNA HELICASE |
Ama16235 | ATP-DEPENDENT DNA HELICASE |
Ama16236 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama16237 | BARRIER TO AUTOINTEGRATION FACTOR 2 |
Ama16238 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama16239 | THAP DOMAIN PROTEIN |
Ama16241 | |
Ama16242 | GH28348P |
Ama16243 | ZINC FINGER PROTEIN ZIC AND GLI |
Ama16244 | UNCHARACTERIZED |
Ama16245 | |
Ama16246 | TONSOKU-LIKE PROTEIN |
Ama16247 | GH3 DOMAIN-CONTAINING PROTEIN |
Ama16248 | METALLOPROTEASE TLDD |
Ama16249 | ANKYRIN REPEAT AND DEATH DOMAIN-CONTAINING PROTEIN |
Ama16250 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED |
Ama16251 | BONUS, ISOFORM C-RELATED |
Ama16253 | |
Ama16255 | |
Ama16256 | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN |
Ama16257 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama16258 | INHIBITOR OF APOPTOSIS |
Ama16259 | ARYLSULFATASE FAMILY MEMBER |
Ama16261 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama16262 | DNA TOPOISOMERASE I |
Ama16263 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 |
Ama16264 | CDC68 RELATED |
Ama16265 | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED |
Ama16266 | IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX |
Ama16267 | PROTEASE-RELATED |
Ama16269 | 3'-5' EXONUCLEASE ERI1-RELATED |
Ama16270 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
Ama16271 | PROTEASE-RELATED |
Ama16272 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
Ama16273 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
Ama16274 | NULP1-RELATED |
Ama16275 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
Ama16276 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
Ama16277 | |
Ama16278 | |
Ama16279 | CENTROMERE PROTEIN T |