About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361 Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama16097
Ama16099
Ama160_5db7b01aTRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Ama16100
Ama16101EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama16102THAP DOMAIN PROTEIN
Ama16103NEPHRIN
Ama16105CONTACTIN 5
Ama16106RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Ama16107CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Ama16108
Ama16109RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Ama16110TRANSPOSABLE ELEMENT-RELATED
Ama16111
Ama16112ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Ama16113
Ama16114CONTACTIN 5
Ama16117
Ama16118
Ama16119SIDESTEP PROTEIN
Ama16120
Ama16121
Ama16122
Ama16123
Ama16124NEPHRIN
Ama16125
Ama16126IG-LIKE DOMAIN-CONTAINING PROTEIN
Ama16128CALPAIN
Ama16129CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8
Ama16130SIDESTEP PROTEIN
Ama16131NEPHRIN
Ama16133CONTACTIN 5
Ama16134CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama16135CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama16136
Ama16138
Ama16139NEPHRIN
Ama16141
Ama16142N-LYSINE METHYLTRANSFERASE KMT5A
Ama16144EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama16145THAP DOMAIN PROTEIN
Ama16146ACTIN
Ama16147
Ama16149VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Ama16151
Ama16152CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4
Ama16153PROTEIN ARGININE N-METHYLTRANSFERASE 5
Ama16154PARANEOPLASTIC ANTIGEN
Ama16155
Ama16156NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER
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