The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama15771 | |
| Ama15773 | NEPHRIN |
| Ama15774 | |
| Ama15777 | NEPHRIN |
| Ama15778 | CONTACTIN 5 |
| Ama15779 | |
| Ama15781 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 |
| Ama15782 | |
| Ama15783 | |
| Ama15784 | |
| Ama15785 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Ama15786 | |
| Ama15787 | |
| Ama15788 | |
| Ama15790 | CONTACTIN 5 |
| Ama15791 | CONTACTIN 5 |
| Ama15793 | |
| Ama15794 | |
| Ama15795 | SIDESTEP PROTEIN |
| Ama15796 | |
| Ama15798 | |
| Ama157_5db7b01a | METAXIN RELATED |
| Ama15800 | REVERSE TRANSCRIPTASES |
| Ama15801 | |
| Ama15803 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama15804 | TRANSPOSON |
| Ama15805 | |
| Ama15806 | |
| Ama15807 | THAP DOMAIN PROTEIN |
| Ama15808 | |
| Ama15809 | |
| Ama15810 | NEPHRIN |
| Ama15812 | |
| Ama15813 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama15814 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Ama15815 | |
| Ama15816 | |
| Ama15817 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Ama15818 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Ama15820 | |
| Ama15821 | |
| Ama15823 | NEPHRIN |
| Ama15825 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Ama15826 | |
| Ama15827 | |
| Ama15828 | |
| Ama15831 | |
| Ama15833 | |
| Ama15834 | CONTACTIN 5 |
| Ama15835 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
