The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama15956 | |
| Ama15960 | |
| Ama15963 | UNCHARACTERIZED |
| Ama15964 | PUTATIVE-RELATED |
| Ama15965 | ZINC FINGER PROTEIN |
| Ama15966 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| Ama15967 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama15968 | NEPHRIN |
| Ama15969 | |
| Ama15970 | PROTEIN CBG23764 |
| Ama15971 | |
| Ama15972 | |
| Ama15973 | |
| Ama15974 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama15976 | NEPHRIN |
| Ama15977 | |
| Ama15978 | |
| Ama15979 | |
| Ama15980 | NEPHRIN |
| Ama15981 | SIDESTEP PROTEIN |
| Ama15982 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama15983 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| Ama15984 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama15985 | INHIBITOR OF APOPTOSIS |
| Ama15986 | |
| Ama15988 | |
| Ama15989 | NECTIN-RELATED |
| Ama15990 | NECTIN-RELATED |
| Ama15991 | INHIBITOR OF APOPTOSIS |
| Ama15992 | NEPHRIN |
| Ama15993 | |
| Ama15994 | RHO FAMILY GTPASE |
| Ama15995 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama15996 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama15999 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama159_5db7b01a | PYRUVATE DEHYDROGENASE KINASE |
| Ama15_5db84494 | DYNEIN HEAVY CHAIN |
| Ama16000 | |
| Ama16001 | |
| Ama16002 | |
| Ama16003 | PUTATIVE-RELATED |
| Ama16005 | |
| Ama16006 | CONTACTIN 5 |
| Ama16008 | |
| Ama16012 | |
| Ama16014 | NICASTRIN |
| Ama16016 | UNCHARACTERIZED |
| Ama16017 | HYPOTHETICAL PROTEIN LOC691189 |
| Ama16018 | |
| Ama16019 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
