The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama15381 | |
Ama15382 | VANG-LIKE PROTEIN |
Ama15383 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
Ama15384 | BUD13 HOMOLOG |
Ama15385 | ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 |
Ama15387 | HOMEOBOX PROTEIN |
Ama15390 | C5ORF31 |
Ama15391 | |
Ama15392 | |
Ama15395 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama15396 | SOLUTE CARRIER FAMILY 39 |
Ama15397 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
Ama15398 | |
Ama15399 | NUCLEAR HORMONE RECEPTOR |
Ama15401 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
Ama15402 | BAX INHIBITOR-RELATED |
Ama15403 | EXPRESSED PROTEIN |
Ama15405 | TRAF3-INTERACTING PROTEIN 1 |
Ama15407 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Ama15408 | SOLUTE CARRIER FAMILY 25 |
Ama15410 | |
Ama15411 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
Ama15412 | SEMAPHORIN |
Ama15414 | |
Ama15415 | HRAS-LIKE SUPPRESSOR - RELATED |
Ama15416 | HRAS-LIKE SUPPRESSOR - RELATED |
Ama15417 | HRAS-LIKE SUPPRESSOR - RELATED |
Ama15418 | HRAS-LIKE SUPPRESSOR - RELATED |
Ama15419 | |
Ama15420 | AGAP005574-PA |
Ama15421 | THAP DOMAIN PROTEIN |
Ama15422 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama15423 | - |
Ama15424 | |
Ama15425 | GLYCOGEN SYNTHASE KINASE-3 ALPHA |
Ama15427 | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 2 |
Ama15428 | G-PROTEIN COUPLED RECEPTOR 89-RELATED |
Ama15430 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Ama15431 | BONUS, ISOFORM C-RELATED |
Ama15433 | INHIBITOR OF APOPTOSIS |
Ama15434 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama15435 | |
Ama15436 | |
Ama15437 | ORIGIN RECOGNITION COMPLEX SUBUNIT 2 |
Ama15438 | |
Ama15439 | UNCHARACTERIZED |
Ama15442 | ZINC FINGER PROTEIN |
Ama15443 | 50S/60S RIBOSOMAL PROTEIN L14/L23 |
Ama15444 | COPPER AMINE OXIDASE |
Ama15445 |