The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama150_5db7b01a | - |
Ama15100 | PEROXISOMAL TRANS-2-ENOYL-COA REDUCTASE |
Ama15101 | RIBULOSE-5-PHOSPHATE-3-EPIMERASE |
Ama15102 | HISTONE H4 TRANSCRIPTION FACTOR-RELATED |
Ama15103 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
Ama15105 | |
Ama15106 | ANNEXIN |
Ama15107 | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED |
Ama15108 | COSTARS FAMILY PROTEIN ABRACL |
Ama15111 | PROTEIN CBR-CLEC-78 |
Ama15113 | |
Ama15114 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Ama15116 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Ama15117 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama15118 | FIBRILLIN-RELATED |
Ama15119 | SELENOPROTEIN O |
Ama15120 | CENTAURIN-GAMMA-1A |
Ama15123 | |
Ama15127 | SOLUTE CARRIER FAMILY 17 |
Ama15128 | TRANSFORMER-2-RELATED |
Ama15129 | LEUCINE ZIPPER TRANSCRIPTION FACTOR LIKE |
Ama15130 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
Ama15131 | RING FINGER DOMAIN-CONTAINING |
Ama15132 | |
Ama15134 | PORPHOBILINOGEN DEAMINASE |
Ama15135 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 4 HOMOLOG, MITOCHONDRIAL |
Ama15136 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5 |
Ama15137 | UNCHARACTERIZED |
Ama15138 | NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52 |
Ama15139 | ARCHAEMETZINCIN-2-RELATED |
Ama15140 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
Ama15142 | HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER |
Ama15143 | TRANSPOSABLE ELEMENT-RELATED |
Ama15144 | SPORE COAT PROTEIN SP85 |
Ama15145 | A1 CISTRON SPLICING FACTOR AAR2-RELATED |
Ama15146 | CBL |
Ama15147 | UNNAMED PRODUCT |
Ama15149 | MITOCHONDRIAL RIBOSOMAL PROTEIN L37 |
Ama15150 | GTPASE, IMAP FAMILY MEMBER-RELATED |
Ama15152 | |
Ama15154 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
Ama15157 | UNCHARACTERIZED |
Ama15158 | |
Ama15159 | |
Ama15160 | ZGC:195170 |
Ama15161 | SI:CH211-108C17.2-RELATED-RELATED |
Ama15162 | GALACTOSE-3-O-SULFOTRANSFERASE |
Ama15164 | PROTEIN CBG10425 |
Ama15165 | |
Ama15167 | SIMILAR TO RIKEN CDNA E130308A19 |