The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama15511 | NITRIC OXIDE SYNTHASE OXYGENASE |
| Ama15512 | |
| Ama15513 | |
| Ama15514 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Ama15515 | |
| Ama15516 | NITRIC OXIDE SYNTHASE OXYGENASE |
| Ama15517 | NITRIC OXIDE SYNTHASE OXYGENASE |
| Ama15518 | |
| Ama15519 | |
| Ama15522 | |
| Ama15523 | |
| Ama15524 | |
| Ama15525 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Ama15533 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama15534 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama15535 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Ama15536 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| Ama15537 | |
| Ama15538 | SPONDIN |
| Ama15539 | SPONDIN |
| Ama15546 | SCAVENGER RECEPTOR CLASS F |
| Ama15547 | SH3 DOMAIN-BINDING PROTEIN 5 |
| Ama15548 | NEPHRIN |
| Ama15549 | NEPHRIN |
| Ama15550 | |
| Ama15551 | NEPHRIN |
| Ama15552 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Ama15553 | |
| Ama15554 | NEPHRIN |
| Ama15555 | NEPHRIN |
| Ama15556 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Ama15557 | NEPHRIN |
| Ama15559 | |
| Ama15560 | |
| Ama15561 | |
| Ama15562 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Ama15563 | NEPHRIN |
| Ama15564 | TITIN |
| Ama15565 | |
| Ama15567 | NEPHRIN |
| Ama15568 | PARANEOPLASTIC ANTIGEN |
| Ama15569 | |
| Ama15571 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Ama15572 | |
| Ama15574 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| Ama15576 | SPHINGOMYELINASE FAMILY MEMBER |
| Ama15577 | MULTICOPPER OXIDASE-RELATED |
| Ama15578 | ASPARTYL PROTEASE-RELATED |
| Ama15583 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
| Ama15584 | YALI0E18722P |
