About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361 Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama13641PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
Ama13642PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
Ama13648SCAVENGER RECEPTOR CLASS F
Ama13649SCAVENGER RECEPTOR CLASS F
Ama13652
Ama13653
Ama13655TOL-PAL SYSTEM PROTEIN TOLA
Ama13656
Ama13657E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
Ama13658E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
Ama13659EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama13660PALMITOYLTRANSFERASE ZDHHC16
Ama13662
Ama13663PALMITOYLTRANSFERASE ZDHHC16
Ama13664COPPER AMINE OXIDASE
Ama13667
Ama13668C20ORF30 PROTEIN
Ama13669MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Ama13670CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Ama13671
Ama13678
Ama13680STI2 PROTEIN-RELATED
Ama13684MORTALITY FACTOR 4-LIKE PROTEIN
Ama13685ALPHA-AMYLASE FAMILY MEMBER
Ama13686
Ama13687UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1
Ama13689PARANEOPLASTIC ANTIGEN
Ama13690
Ama13691ASPARTYL-TRNA SYNTHETASE
Ama13693KRAB AND ZINC FINGER DOMAIN-CONTAINING
Ama13694SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
Ama13695SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
Ama13696DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Ama13697PIKACHURIN-LIKE PROTEIN
Ama13698PIKACHURIN-LIKE PROTEIN
Ama136_5db7b01aPROTEIN SGT1 HOMOLOG
Ama13700NEPHRIN
Ama13703CEREBELLIN-RELATED
Ama13704RETINOBLASTOMA-BINDING PROTEIN 5
Ama13706
Ama13710CALPONIN
Ama13711CALPONIN
Ama13712CALPONIN
Ama13714UNNAMED PRODUCT
Ama13715
Ama13716SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Ama13718
Ama13720ZINC FINGER PROTEIN 142
Ama13721THAP DOMAIN PROTEIN
Ama13722UNCHARACTERIZED
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